rs45897574 SNP Detail

Summary

• ID
  rs45897574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTCTCGTA GCAGAAATGG TGACTGTGGA GTCAAGGACA
  TGGGGTGGGG GGTTATAGGG TAGATATCTA ACTTGGTTAC CACAAAGAGG TGGACCCAGT
  R
  TTTGAAGGGG AGGGGGGCCA GTTATTATGA GGCTGAGGTT CTGGTGACTT AGAGGGGACA
  GTCTACACAA GTCCTCGGCA GCAGCACTGT AACCTATGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148682356	ENSMUSSNP1181019	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss322135222	CHEV_7_31339104	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45897574					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	1434 bp distal
Cpgi18809	CpG island 18809	551 bp distal
Cpgi18810	CpG island 18810	141 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1356 bp downstream
Mir9769	microRNA 9769	1181 bp downstream
Proser3	proline and serine rich 3	1786 bp upstream
Rr400242	regulatory region 400242	1593 bp downstream
Tssr65779	transcription start site region 65779	1521 bp downstream
Tssr65780	transcription start site region 65780	813 bp downstream
Tssr65781	transcription start site region 65781	776 bp downstream
Tssr65782	transcription start site region 65782	687 bp upstream
Tssr65783	transcription start site region 65783	762 bp upstream
Tssr65784	transcription start site region 65784	786 bp upstream
Tssr65785	transcription start site region 65785	838 bp upstream
Tssr65786	transcription start site region 65786	856 bp upstream
Tssr65787	transcription start site region 65787	950 bp upstream
Tssr71787	transcription start site region 71787	1769 bp upstream
Tssr71788	transcription start site region 71788	1710 bp upstream
Tssr71789	transcription start site region 71789	580 bp downstream
Tssr71790	transcription start site region 71790	692 bp downstream