rs45897650 SNP Detail

Summary

• ID
  rs45897650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72154199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATACAGAC TATCAATTTA
  ACTATGCTGC CACCACCACG CCTCGCAGTT TACTTCACCA CAGCCTAACT CCCATACAGG
  GAAAGTTTCA CAAACTCGAA CAGGGGAAAC CGAGTCAGAG CCGAGGCCAC CCGGCTGTGC
  AGACACTGGG GAAAACGCGG GCTTCTGATC CTGGAAAGTA GCGGGGCTAC TTCGCGGCGT
  Y
  TAAGAGACCC GGAGCCCAGG AGTATGGCCG GGGCTGCGGA GCATCTTCAG CACGGTGCAG
  CTAGAAAGCG CCACAGATTT CAACTTCGCA CCACCCCACC CGAGACCCTG GCACTCACTG
  CGATCGCGGG CTCCAGACAA CCCCGGAGGC CACACTGTTT ACCTGGGCGA CCGCCTTGAG
  CTGGCTCTTG GCTACTCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60630726	NES16282540	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45897650					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60630726	NES16282540	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72154199 () rs orientation: forward

Symbol	Name	Function Class
B3gnt3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	within coordinates
Cpgi20570	CpG island 20570	within coordinates
Rr382258	regulatory region 382258	208 bp downstream
Rr665157	regulatory region 665157	within coordinates
Rr665158	regulatory region 665158	224 bp proximal
Rr665159	regulatory region 665159	416 bp proximal
Rr665160	regulatory region 665160	634 bp proximal
Rr665161	regulatory region 665161	1724 bp proximal
Rr665162	regulatory region 665162	1725 bp proximal
Tssr81749	transcription start site region 81749	187 bp downstream
Tssr81750	transcription start site region 81750	207 bp downstream
Tssr81751	transcription start site region 81751	241 bp downstream
Tssr81752	transcription start site region 81752	1051 bp downstream