rs45898481 SNP Detail

Summary

• ID
  rs45898481
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33037878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCCTATC TTATGACTTT
  GGTATTTGTC AGTCTGTATG AAATGCAACT TTTAATGTAG GGCTTTCAAA TCTACATGCA
  AAAATGCACA GGAAAAATTA TTTACACAAA GATACAGACA GAACACTGCT TCTCGTGTTT
  GTGTCTCTTA TTCACTTACA TAAGTTAGAT CACAGGATGA TTAGACAGAG GAAAATGGTC
  S
  GTTCATGGAG GAGTTATAGC AGCGTTAGAC AAAGTAGAGA TGATCTGTTT TGGAAAGTTT
  CTAGCTTGGT ACTTTACCTC CAAGAAGTCT AAAAATGTTA GGATAACCAC ACACACAGTT
  TCAGTTTTGT TGTTATTTGG TTATTTGGTT GATTTTAGGG TTTTTTTGTT TTGCTTTTTT
  GTTTGTTTGT TTGTTTGTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60876103	NES15978862	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C		G	C	C	G		G
ss321780407	CHEV_6_33010943	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45898481					SNP	C	C	C	C	C	C	G	C	C	C	C	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876103	NES15978862	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33037878 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	672 bp upstream
Cpgi17277	CpG island 17277	578 bp distal
Rr146107	regulatory region 146107	277 bp distal
Rr399607	regulatory region 399607	408 bp downstream
Tssr60218	transcription start site region 60218	691 bp upstream
Tssr60219	transcription start site region 60219	676 bp upstream