rs45900735 SNP Detail

Summary

• ID
  rs45900735
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72534098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGTATTGT TTGAGTCTGG GGAGGGGGAG GGGAAAAACA
  TGTGACTGCA GATACCAGCA GAGCCTGGAA GAGGGGCACC AGAGTTGGAG TTATAAGCAG
  C
  TGTGAACTGC CTATTGTGGG TGCTCAGAAC AGAACTCAGG TCCTCTTAGA AGAGCAGTGT
  GTACTCTTGA CCACTGAGTC ACCTCTGTAG TAACCTCAG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321822108	CHEV_6_72507109	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45900735					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72534098 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	1312 bp downstream
Tssr57143	transcription start site region 57143	1286 bp downstream
Tssr57144	transcription start site region 57144	997 bp downstream
Tssr57145	transcription start site region 57145	957 bp downstream
Tssr57146	transcription start site region 57146	938 bp downstream
Tssr57147	transcription start site region 57147	219 bp upstream
Tssr57148	transcription start site region 57148	1558 bp upstream
Tssr57149	transcription start site region 57149	1651 bp upstream
Tssr61469	transcription start site region 61469	674 bp downstream