rs45901642 SNP Detail

Summary

• ID
  rs45901642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:122968650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATATAT ATATATATAT
  ATATGTACAT ATATATACAT ATATACACAT ATATATGTAT ATACACACAC ATATATATTT
  TTCAGATCTC AAAATATTAA TATCAGTTAT TTCAACAGTG TAAGTTTGTG CTTTTATTTT
  TCTGTTACTT GAAATGTTCA TACTATTAGT AAATTATGTA TCCTAGACAA AATGGGAAAA
  R
  AGAAGTGTGG AAAAGAAGAA ACAAGGATGG ACTTATTTCT CATGAAATGA ATGTGCTTCT
  CCTTCTAGCT CCCAGAGAGA AACCTATCCG TGATCTAAGA AAGCCTGGTT CCCCCTCACT
  GCTTCTTACA TCCCTGATGC TACTTCTCCT GCTGCTGGCA ATCACATTCT TAGTTGCTTT
  TATCAGTAAG TATCCTGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60937734	NES16191452	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs45901642					SNP	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60937734	NES16191452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122968650 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	Intron
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	235 bp distal
Tssr58744	transcription start site region 58744	1383 bp downstream
Tssr58745	transcription start site region 58745	1326 bp downstream