rs45902655 SNP Detail

Summary

• ID
  rs45902655
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37693158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC CCAAAATATC CTAACTCACA
  A
  TCACAGGTGA TTTAGATCAT GGAGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134809945	ENSMUSSNP2252666	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320711439	CHEV_3_37537931	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45902655					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37693158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	672 bp proximal
Gm42922	predicted gene 42922	1096 bp downstream
Rr575523	regulatory region 575523	448 bp proximal
Rr575524	regulatory region 575524	1082 bp proximal
Rr575525	regulatory region 575525	1767 bp proximal
Rr575526	regulatory region 575526	1875 bp proximal
Spry1	sprouty RTK signaling antagonist 1	938 bp upstream
Tssr28908	transcription start site region 28908	655 bp upstream
Tssr28909	transcription start site region 28909	896 bp upstream
Tssr28910	transcription start site region 28910	919 bp upstream
Tssr28911	transcription start site region 28911	936 bp upstream
Tssr28912	transcription start site region 28912	976 bp upstream