rs45902696 SNP Detail

Summary

• ID
  rs45902696
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139547426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG ATACCAGACC AGAACTTCAC
  A
  ACGACAGAAG GGGAGCGTCC TGGTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321384706	CHEV_4_139376030	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45902696					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139547426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15176	CpG island 15176	980 bp proximal
Pax7	paired box 7	within coordinates
Rr603312	regulatory region 603312	1416 bp distal
Rr603313	regulatory region 603313	within coordinates
Tssr1358	transcription start site region 1358	1529 bp upstream