rs45902837 SNP Detail

Summary

• ID
  rs45902837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104700036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTGGGGC CCTCAGGCCA
  ACTGCTCAAT AGCCTTGTGT GTCAGGTGGA GCTGGCTCTG TGGGACACAG CTGGGCAAGA
  AGACTACGAT CGCCTGCGGC CTCTCTCCTA CCCGGACACT GACGTCATCC TCATGTGTTT
  CTCCATTGAC AGCCCTGACA GTTTGGGTAA GGCTTTGGAA GAATCTTGGG AGCATGTAGG
  Y
  CCTGCAAGTC TCCTTTGCTA TAGAGACAGT AGCCCTTGGG GTGAGGAGTG TTCACTGCAA
  AGGGCTTTGA GCTGTGCAAG GTACTGCCTG TTCAGTAGAC TCCAGGGCTG CTATAGAAGA
  CCTGGCTTCT GTTGCTAAGT AGAAGTGGGT ACATCCACGT TTTGGTGATA TCTCTGCAGA
  AAACATTCCT GAGAAGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60431836	NES15936315	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45902837					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431836	NES15936315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104700036 () rs orientation: forward

Symbol	Name	Function Class
Gm66976	predicted gene, 66976	within coordinates
Rhoc	ras homolog family member C	within coordinates
Rr77009	regulatory region 77009	1035 bp distal
Rr77010	regulatory region 77010	1164 bp proximal
Tssr31060	transcription start site region 31060	1301 bp upstream
Tssr31061	transcription start site region 31061	1362 bp upstream
Tssr31062	transcription start site region 31062	1561 bp upstream
Tssr34890	transcription start site region 34890	658 bp upstream
Tssr34891	transcription start site region 34891	1736 bp downstream