rs45903039 SNP Detail

Summary

• ID
  rs45903039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87195442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATAAGA GACTTAAAAT
  TGAGTCTCTT AGGAGGGCCG ATATGTAGGA AGGCGGCACA TTAGATGCAA AGGACATTGC
  ATCCGGTTAA TATAGATTTT CCACATACAG ATGTGATTTT TCAGGATTTT AATCATGTAA
  GAAATGGTAT AAAAACAGCT AGGGATGTAC GCAACTCTGA CGTAGCTCCT AGCATGGGCC
  R
  AGTCTCCCAC AACAGAAAAA CTGCAAATTT AAAGTCGCCA GAATGCATGT TTGAGTTGGA
  AACATGATCC TTCCCGGTGC TAATTAAACG GACATTCTAC TTGATATTAA AAAGTAGCTG
  TTCAAGTGCA AAAATCGCCA GGTGGTTTGC TGTTAGTGCT TAGCTGTGAT TTCTCTCCCT
  GTTTATCTAA AAGCACATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52451846	NES15431660	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45903039					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451846	NES15431660	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87195442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	276 bp distal
Gm6566	predicted gene 6566	807 bp downstream
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	within coordinates
Pomt2	protein-O-mannosyltransferase 2	700 bp upstream
Rr403429	regulatory region 403429	1388 bp downstream
Rr403430	regulatory region 403430	845 bp downstream
Rr470321	regulatory region 470321	1493 bp distal
Rr470322	regulatory region 470322	1544 bp distal
Rr470323	regulatory region 470323	886 bp distal
Rr470324	regulatory region 470324	1162 bp distal
Rr470325	regulatory region 470325	276 bp distal
Tssr114506	transcription start site region 114506	1467 bp downstream
Tssr114507	transcription start site region 114507	885 bp downstream
Tssr114508	transcription start site region 114508	876 bp downstream
Tssr114509	transcription start site region 114509	671 bp downstream
Tssr117156	transcription start site region 117156	1192 bp upstream
Tssr117157	transcription start site region 117157	1173 bp upstream
Tssr117158	transcription start site region 117158	760 bp upstream