rs45903768 SNP Detail

Summary

• ID
  rs45903768
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81015145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTGGCC TGCATGGCTG
  GGCCTTCACC CTGAAGCAGT TTGCGGAGAT GTATGTGGCC AAGTTTGCAG CCAAGGGTGA
  GGGCCAGCTG AGCGCAGCCG AGCGTGCCAA GAAAGTAGAG GACATGATGA AGAAGCTGTG
  GGGAGACCGG TGAGTACATG GCTGTGTGAC TGTCTCTACC CCTGCTACTT GTGGACAATG
  M
  CTGCCTGCCG ATACTATGTG ACTGCTCTCT ACAGGTACTT TGATCCGGCC AATGGCAAGT
  TCAGTAAGTC AGCCAATAGC CCAGATGGGA AAAAACTTCC CCGCACCTTC TGCCAGCTCA
  TCCTGGACCC CATCTTCAAG GTGGGTAAGC TGTGGTCCTG GCCTGTGTTC CCAGCCTTGG
  GAAGTCGCTC CCATGACCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388475	NES15267097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45903768					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388475	NES15267097	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81015145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	1135 bp distal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435544	regulatory region 435544	1752 bp distal
Rr435545	regulatory region 435545	364 bp proximal
Rr435546	regulatory region 435546	856 bp proximal
Snord37	small nucleolar RNA, C/D box 37	298 bp downstream
Tssr94696	transcription start site region 94696	1574 bp downstream
Tssr94697	transcription start site region 94697	1474 bp downstream
Tssr94698	transcription start site region 94698	1223 bp downstream
Tssr94699	transcription start site region 94699	106 bp downstream
Tssr94700	transcription start site region 94700	23 bp upstream
Tssr94701	transcription start site region 94701	83 bp upstream
Tssr94702	transcription start site region 94702	260 bp upstream
Tssr94703	transcription start site region 94703	323 bp upstream
Tssr94704	transcription start site region 94704	342 bp upstream
Tssr94705	transcription start site region 94705	370 bp upstream
Tssr94706	transcription start site region 94706	562 bp upstream
Tssr94707	transcription start site region 94707	612 bp upstream
Tssr94708	transcription start site region 94708	677 bp upstream
Tssr94709	transcription start site region 94709	931 bp upstream
Tssr98570	transcription start site region 98570	67 bp downstream
Tssr98571	transcription start site region 98571	435 bp downstream