rs45904120 SNP Detail

Summary

• ID
  rs45904120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23791763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCAGTCAA AGTGTCCTTA CATGTCACCT ACGTTTATGT
  CCACACGTTA CTGCTGCTGT CGGCTGTCAT CAGAGCTGCT CTGTGTTGCA ACAGGAAACC
  R
  ACCAAGGTAC AGAGAGAGAG AGAGAGCTTG GGACTACTTA GTGCTCAGCC CTACACAGAC
  ATTTACATCG TCCCGCTCCA AGACTCAGCA GACATCATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148061164	ENSMUSSNP52511	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss321489816	CHEV_5_23092583	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45904120					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23791763 () rs orientation: forward

Symbol	Name	Function Class
Rr117577	regulatory region 117577	38 bp proximal
Rr117578	regulatory region 117578	1638 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	29 bp upstream
Tssr50280	transcription start site region 50280	138 bp upstream