rs45905313 SNP Detail

Summary

• ID
  rs45905313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24793160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGATCT TAAGACCCTG
  AAAGCCACGC ATGGCCACAC ACTCCTATCT CAGCACTCAG AAAGCAGGCA GCAAGTTCAA
  AGCCAGCCTG GACCACCTAG CAAGAACCTA TCACAATGTA ATCTGCATGG CAAAGCTGCC
  ATTTTGATAG GCTCGGACGT AGAGGGGAGC CCTTGGTGAG AAAGGGAAAA CCTGTGGTAT
  R
  TCCTTAGAAG AGGCAGGAAC CAGGAGCCCC GATTGCCCTT GCCTTGTGAC ATACTTGGCA
  TGGTTCTGGG CAAGTTGGTT ACCTTCCGAA TCTCTGCAGA CCTGCTTAGA AAGGGTCAGT
  CTGCCCCATC TACTACAAAG TGCCGTTTAA GAATACAAAG AGAAAACAAC CCTCTGCATC
  CATGTTTCCA CCAGGCATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61262536	NES16880244	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs45905313					SNP	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262536	NES16880244	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24793160 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Intron
Tssr92746	transcription start site region 92746	1625 bp downstream
Tssr92747	transcription start site region 92747	1535 bp downstream
Tssr97085	transcription start site region 97085	1769 bp upstream
Tssr97086	transcription start site region 97086	1707 bp upstream
Tssr97087	transcription start site region 97087	1681 bp upstream
Tssr97088	transcription start site region 97088	1621 bp upstream
Tssr97089	transcription start site region 97089	1606 bp upstream
Tssr97090	transcription start site region 97090	1575 bp upstream
Tssr97091	transcription start site region 97091	1180 bp upstream
Tssr97092	transcription start site region 97092	1161 bp upstream
Tssr97093	transcription start site region 97093	1134 bp upstream
Tssr97094	transcription start site region 97094	1123 bp upstream
Tssr97095	transcription start site region 97095	1106 bp upstream
Tssr97096	transcription start site region 97096	821 bp upstream
Tssr97097	transcription start site region 97097	574 bp upstream
Tssr97098	transcription start site region 97098	415 bp upstream
Tssr97099	transcription start site region 97099	685 bp downstream
Tssr97100	transcription start site region 97100	723 bp downstream