rs45905922 SNP Detail

Summary

• ID
  rs45905922
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96681365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAGGCAA GACTCATCCA
  ATGAAAGAGA TCTGTTCTTT GTGCGTAAGC CTGGGGGCCT CAGTTTACCT CTCAGGATCC
  AGGTAAAGGT GGAAAGAGCG AGCAGACTTC ACAGAATTGC CCTCTGAGCT ACAAATTAGG
  GAAATGGCAG GGACCCTCGA AAGCAGGTGC ATGCCCACCG GCAGCGAGAA TATTTTTATT
  W
  AAAAAGCAGT ATAGAAATAT AGAACTCATT TCGGTGTGTG GTACTGAGGA CCTTGCACAC
  ATGTAAGTTA TCTACCACTG AGTTATGTTC CAATACCATA AAAAGGTTTT TTGAAAAATG
  AGTTATGCTA GAACATAGGG TAACCTCTCC AGTTTTGTGT TAAGAATCAT GTCAGCTTTT
  TGGAATAGTT TCAAAAGACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132687367	ENSMUSSNP1590878	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss323822809	CHEV_11_96651853	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45905922					SNP	T	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96681365 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			Intron
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			728 bp distal
Rr455508	regulatory region 455508			1280 bp distal
Rr455509	regulatory region 455509			96 bp distal
Rr455510	regulatory region 455510			174 bp proximal
Rr455511	regulatory region 455511			973 bp proximal
Tssr104569	transcription start site region 104569			1393 bp downstream
Tssr104570	transcription start site region 104570			1333 bp downstream
Tssr104571	transcription start site region 104571			1315 bp downstream
Tssr104572	transcription start site region 104572			1285 bp downstream
Tssr110346	transcription start site region 110346			1531 bp upstream