rs45906002 SNP Detail

Summary

• ID
  rs45906002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19242660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAA GCGTTGGCCA GGCGTGAGGG
  Y
  CGCGAGGCGG CGTATGGCGG ACGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148477878	ENSMUSSNP4494984	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss322117402	CHEV_7_20094084	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45906002					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19242660 () rs orientation: forward

Symbol	Name	Function Class
Bloc1s3	biogenesis of lysosomal organelles complex-1, subunit 3	365 bp upstream
Cpgi18495	CpG island 18495	within coordinates
Gm74038	predicted gene, 74038	599 bp downstream
Rr167175	regulatory region 167175	within coordinates
Rr400150	regulatory region 400150	within coordinates
Trappc6a	trafficking protein particle complex 6A	within coordinates
Tssr64863	transcription start site region 64863	1375 bp downstream
Tssr64864	transcription start site region 64864	within coordinates
Tssr64865	transcription start site region 64865	8 bp upstream
Tssr64866	transcription start site region 64866	25 bp upstream
Tssr70925	transcription start site region 70925	431 bp upstream
Tssr70926	transcription start site region 70926	358 bp upstream
Tssr70927	transcription start site region 70927	346 bp upstream