rs45907137 SNP Detail

Summary

• ID
  rs45907137
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148516075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAACGTG TCTCAATAAA
  ATAATAAAGG CTCTTGAAAT GAAAAAGCAT GTGTTCACAG CTTAAAGTTT TAAGCTTACT
  CTGTAGAGAC CCTGTTTCTG GAAATTGGCA AATAATATAA ATTACTTGTG TCCTATTTTC
  AGTAATATTG ATCAGTACTA GGTTCTTTTA AGTGGAAATA GTTAACCATA GAAAAAATTA
  G
  CAGCCATTCC TGTTGTAAAA AGAAAAGCCA TGCTGCTTAT GTGATGGAAC TTTAATGTTT
  TAAGGAACTG TGATCTTCCG GAATCTCCCT GAGACTGTTT GAATGCTAGA GCCTTTCTGC
  TATGGTGTCA TGGCCCTGCT GGTCTTAAAT GGTGGCCATT AATGCTGAAG ACATAAATTC
  TAGTTAGTCT TGGGTTTACT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147930970	ENSMUSSNP1543689	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45907137					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148516075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12399	CpG island 12399	1087 bp distal
Gm75182	predicted gene, 75182	442 bp downstream
Nxt1	NTF2-related export protein 1	within coordinates
Rr397374	regulatory region 397374	1467 bp downstream
Rr566945	regulatory region 566945	1519 bp distal
Rr566946	regulatory region 566946	1649 bp distal
Rr566947	regulatory region 566947	308 bp distal
Tssr20647	transcription start site region 20647	1433 bp downstream