rs45907396 SNP Detail

Summary

• ID
  rs45907396
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28525638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGTTCTC CACGTGCAGC
  TAAACCGGCC AGAGAAGAGG AATGCCATGA ACAGGGCTTT CTGGAGGTCT GGCCTGCAAG
  CCCACAAGCC TATCTGCTAG AGGAGACAGA GGTGGGCAGG GACAGGGGCT TCCCACTCCA
  GATATAACCC TTTACTTCTT ATGCCTCTGC AGGGAGTTGG TGGAATGCTT CCAAAAGATA
  K
  CCAAAGACTC GGACTGCCGG GCTGTTGTAG TCTCCGGTGC AGGAAAGATG TTCACTTCAG
  GTACTTGTCT GCCTGCTGGC GCCTCTCCCC CTGCTGGGGC AGCCATGCTA GCAGTTTTCT
  TTGCTGATTT TGTCACTTAC TCTTTTTTTT TTTCCCTCCC CTGGCTGGCC TGGAACTCTC
  TATTTAGACT AGGCTACTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60988276	NES16135235	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45907396					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988276	NES16135235	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28525638 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18723	CpG island 18723	720 bp distal
Ech1	enoyl coenzyme A hydratase 1, peroxisomal	within coordinates
Rr155798	regulatory region 155798	763 bp proximal
Rr167384	regulatory region 167384	within coordinates
Rr380577	regulatory region 380577	272 bp downstream
Tssr65547	transcription start site region 65547	998 bp downstream
Tssr65548	transcription start site region 65548	928 bp downstream
Tssr65549	transcription start site region 65549	899 bp downstream
Tssr65550	transcription start site region 65550	850 bp downstream
Tssr65551	transcription start site region 65551	1309 bp upstream
Tssr65552	transcription start site region 65552	1418 bp upstream