rs45909769 SNP Detail

Summary

• ID
  rs45909769
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30735674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCCTGCTG GTCTACAACT GCTCTTAAGT TGTATAAGTG
  AATCTATAGT GACCAGAAGA TCTGCCCCAC TGAGCCCAGC CTTAATTTCA ATTTTGAAAA
  K
  TTAGAGCTCA GAAAGCAACC TCCTAGCCAT CCACATGATG ACCTGGTTGG CTCCATGGCA
  CTTAGGCATG TGCTACCACC CAGTCTGACA GCACAGTTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60989537	NES16136140	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T	T		G	T	G	G		T
ss322138592	CHEV_7_31821268	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45909769					SNP	T	T	T	T	T	T	T	G	T	T	T	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989537	NES16136140	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30735674 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	594 bp upstream
Gm71772	predicted gene, 71772	740 bp upstream
Tssr2191	transcription start site region 2191	764 bp upstream
Tssr65830	transcription start site region 65830	981 bp downstream
Tssr65831	transcription start site region 65831	739 bp upstream
Tssr65832	transcription start site region 65832	1159 bp upstream
Tssr65833	transcription start site region 65833	1556 bp upstream
Tssr65834	transcription start site region 65834	1610 bp upstream
Tssr71891	transcription start site region 71891	208 bp downstream
Tssr71892	transcription start site region 71892	769 bp downstream
Tssr71893	transcription start site region 71893	1611 bp downstream
Tssr71894	transcription start site region 71894	1632 bp downstream
Tssr71895	transcription start site region 71895	1645 bp downstream
Tssr71896	transcription start site region 71896	1675 bp downstream