rs45909922 SNP Detail

Summary

• ID
  rs45909922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160902853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctatttcct gtgtctctgt cttccaactt
  ccttttgctc tctgtggttc tttctgatgc tcactccctg tcacctggat gtttgttctg
  cctcttgacc tatggttaac tctattttag tcctgtttac aataaccagc aagctcttgg
  R
  tcaaaggtat gtgctagggc tgagccgtac cataactaga aaccgttttt cctaataaac
  aacacaacct cagggttcac agtgtgatta CTAGCTCACC TTCAAGCTAG TCAGTGATGG
  AGAATATAGA AATAAGAATA TATCAACTTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145905460	ENSMUSSNP2348815	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320080229	CHEV_1_163005414	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45909922					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160902853 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			1004 bp upstream
Rr421754	regulatory region 421754			951 bp proximal