rs45911485 SNP Detail

Summary

• ID
  rs45911485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58665325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCATGTGGAA GCCATAACAA TTCAGGTACC CTGGAACTTG
  TAGTTACAGA TGGTGGTGAG CTGCCATGTG GCTTCCGACC TAGCTCTCCA GTCTTTGTAA
  Y
  CCAGTTCTGA GTGACCTAAT TTATATACTA ATTTATATGC CTTCGTCTTT CTCTTCTCAA
  GTCACTTAAT AACTATTGGT TCTAAACTAT TAATTTCTTA T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146566729	ENSMUSSNP274937	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs45911485					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58665325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	608 bp distal
Pnlip	pancreatic lipase	within coordinates
Tssr157271	transcription start site region 157271	1828 bp downstream
Tssr157272	transcription start site region 157272	1812 bp downstream
Tssr157273	transcription start site region 157273	665 bp downstream
Tssr157274	transcription start site region 157274	662 bp downstream
Tssr157275	transcription start site region 157275	630 bp downstream
Tssr157276	transcription start site region 157276	604 bp downstream
Tssr157277	transcription start site region 157277	371 bp downstream
Tssr157278	transcription start site region 157278	243 bp upstream
Tssr157279	transcription start site region 157279	260 bp upstream
Tssr157280	transcription start site region 157280	276 bp upstream
Tssr159961	transcription start site region 159961	1723 bp upstream