rs45912217 SNP Detail

Summary

• ID
  rs45912217
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155924623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATG TGGGGAGGGA AGTGGACTGG
  K
  GCTGACAACT AAGGGGCTAG TAGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148117638	ENSMUSSNP3686003	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321443278	CHEV_4_155214275	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45912217					SNP	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155924623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	646 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	within coordinates
Rr398927	regulatory region 398927	1018 bp upstream
Tssr40724	transcription start site region 40724	482 bp downstream
Tssr40725	transcription start site region 40725	462 bp downstream
Tssr40726	transcription start site region 40726	404 bp downstream
Tssr40727	transcription start site region 40727	342 bp downstream
Tssr40728	transcription start site region 40728	326 bp downstream
Tssr40729	transcription start site region 40729	935 bp upstream
Tssr40730	transcription start site region 40730	955 bp upstream
Tssr40731	transcription start site region 40731	980 bp upstream
Tssr40732	transcription start site region 40732	1002 bp upstream
Tssr40733	transcription start site region 40733	1246 bp upstream
Tssr44980	transcription start site region 44980	862 bp downstream
Tssr44981	transcription start site region 44981	928 bp downstream