rs45913109 SNP Detail

Summary

• ID
  rs45913109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97726485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCACATTG TTCCACCAAT CATATTGTGC CTAGTTGCTG
  ATGCTCTATT CTGCCCCTGG AAATCACATA AAAACTCGCA GAACAGGTGC TGGGGGGTGC
  Y
  GCCTCTCCTT CCGGGGACGA CCCCAGTGCA CTGGAACAAT AAATTCCTCT TGCTTTTTGC
  ATCGATCCCA TCTCCATGTG GTTCACTCAG GGGGTCCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145037471	ENSMUSSNP615902	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss324497248	CHEV_13_98359932	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45913109					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97726485 () rs orientation: forward

Symbol	Name	Function Class
D13Mit147	DNA segment, Chr 13, Massachusetts Institute of Technology 147	745 bp distal
Gm2379	predicted gene 2379	within coordinates
Gm61499	predicted gene, 61499	1862 bp upstream
Rr274324	regulatory region 274324	916 bp proximal
Rr285535	regulatory region 285535	85 bp distal
Rr388933	regulatory region 388933	within coordinates
Tssr120789	transcription start site region 120789	2 bp downstream
Tssr123601	transcription start site region 123601	1855 bp upstream