rs45914468 SNP Detail

Summary

• ID
  rs45914468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37693899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC AGGGGCCCTG GAATGCCCGC
  Y
  CCTCCCCAGT TGCGCTCGCA GGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134809972	ENSMUSSNP4480668	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320711448	CHEV_3_37538672	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45914468					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37693899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	within coordinates
Gm42922	predicted gene 42922	355 bp downstream
Rr575523	regulatory region 575523	within coordinates
Rr575524	regulatory region 575524	341 bp proximal
Rr575525	regulatory region 575525	1026 bp proximal
Rr575526	regulatory region 575526	1134 bp proximal
Spry1	sprouty RTK signaling antagonist 1	197 bp upstream
Tssr28908	transcription start site region 28908	57 bp downstream
Tssr28909	transcription start site region 28909	155 bp upstream
Tssr28910	transcription start site region 28910	178 bp upstream
Tssr28911	transcription start site region 28911	195 bp upstream
Tssr28912	transcription start site region 28912	235 bp upstream