rs45914601 SNP Detail

Summary

• ID
  rs45914601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31094460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATATCAC TATTCACAGG
  GCCGTTCCGA ATTCACGCTT CTGATTCTAA GAACTCACAT TATGCTGTAA TTACTTTCTG
  AAAGATAAGC CCCTGTCTTC GTGTTAGAAT GCTTTTTTAG AAGCCTTGCA TTTAAAAAAA
  TGGAAAACAG GGTTTTGAAC GGATCCCTCC TAAAAGGACC CCAGCAGATA GAAACTTTTT
  Y
  CTCCAATGAA AAACACTCGT GGGCTGGCAA GATGTCTCAG TGGGCAAAGC ACTTGTCACC
  AAGCTTAACA ACAATGAGTT GGATGCCACC CTGGCATCCA CACAGTAGAA GGAGAAAACC
  ACAAGTTGTA TTCTGACCTG CACATATGCG CTGTGGGGCA TGCACATGCA CACACAGATC
  TACACACAAA CAAGTGTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	PWD/PhJ	WSB/EiJ
ss60563342	NES16495493	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	PWD/PhJ	WSB/EiJ
rs45914601					SNP	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60563342	NES16495493	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31094460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8937	CpG island 8937	774 bp distal
Dnah8	dynein, axonemal, heavy chain 8	within coordinates
Gm9937	predicted gene 9937	202 bp upstream
Gm50252	predicted gene, 50252	within coordinates
Rr330583	regulatory region 330583	660 bp distal
Rr341200	regulatory region 341200	460 bp distal
Tssr147267	transcription start site region 147267	450 bp upstream