rs45915454 SNP Detail

Summary

• ID
  rs45915454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96078261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCT TGTAAGCGTG CGCTCTAGGT
  Y
  GCATTCAGCA CTAGAGGCGC CCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60651686	NES16269112	PERLEGEN	MM_PANEL2	f	SNP		C	C	T	C	T	C	C		T	C	T		T
ss145643112	ENSMUSSNP6561381	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322811400	CHEV_8_97875533	CHEVERUD	SCREENING_POP	f	SNP									C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45915454					SNP	C	C	C	T	C	T	C	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60651686	NES16269112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96078261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20872	CpG island 20872	within coordinates
Mmp15	matrix metallopeptidase 15	663 bp upstream
Tssr78982	transcription start site region 78982	603 bp upstream
Tssr78983	transcription start site region 78983	625 bp upstream