rs45916248 SNP Detail

Summary

• ID
  rs45916248
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88185461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATTATGC CCAGTCTCTT
  GAGTGTTACA AGTCTCGAGG AAGGAGGGAC TGCCCTGATG GAAGGATCCA GACAGCTCGG
  TGGAAACCTA GGAATTGGGA TTGACCATGG GGAATGGCTG GGGTTTTGCT GGGCTTCCTG
  ATGGCAGCCC ACTTGTGCCT CTTGATGTCA GGAAAGCGAG CTGCTACGGT TGAAGGCCTT
  T
  GTTCTCTTTG GGAAGCTTAC AAAAGTGGTT GGGATTTCCA AGAAGCATTT CTTCAAAGGG
  GAGGTGAAGA GAGGCTGGGT CTCCCTCCTG CTGCACTGCC AGGACCCCTG CCCCAGCGTG
  GCCCAGGTAA CACGCCCCTC CCTCCCCATA TCCTATGATC TGGGACCACA GTGCCAAAAG
  GAAAAGGGAA ACCTTGCATC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss144898716	ENSMUSSNP2633314	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs45916248					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88185461 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	1140 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	1371 bp upstream
Tssr7959	transcription start site region 7959	1393 bp upstream
Tssr7960	transcription start site region 7960	1408 bp upstream
Tssr7961	transcription start site region 7961	1455 bp upstream
Tssr7962	transcription start site region 7962	1609 bp upstream
Tssr7963	transcription start site region 7963	1637 bp upstream
Tssr7964	transcription start site region 7964	1652 bp upstream
Tssr7965	transcription start site region 7965	1688 bp upstream