rs45917216 SNP Detail

Summary

• ID
  rs45917216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124794924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTGGGT GTGATGGCAC
  ACGCCTTTAA TCCCAGGACT CAAGAGGCAG GGAGTCAGGA GGATCTCTGA ATTTGAGACA
  AGCCAGGCTA ACCAGGGTTA CATAGTGAGA CTCTGTTTTT AAAAAGAGGG CAGGAAAGAA
  AACACCTAAC ATCAATCAGA GGTCTTATAT TCTCCATATT TTATCTTAAA AATGTAAAAA
  Y
  TGGGTCTCAT GTAGCTAAGG CTGGCATTAA CCCCTCGGTC GTCCTCTATC TTTTTTAAGT
  ACTTGGATTA CAGGCGGGTT TCACCACATT CTCAGTCATG AGACTAGCAG GTACTCAGCT
  CAGCTCACCA TCAGCGATGC ACTTTCCGTT CTCTAGCTCT TTTTTTTCCA AAAAACAACA
  ACAAAAAAAC CCAAATAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145839281	ENSMUSSNP7041949	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45917216					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124794924 () rs orientation: forward

Symbol	Name	Function Class
Gm29897	predicted gene, 29897	within coordinates
Rr672611	regulatory region 672611	940 bp distal
Rr672612	regulatory region 672612	1938 bp proximal
Tssr80018	transcription start site region 80018	1397 bp downstream
Tssr80019	transcription start site region 80019	1389 bp downstream
Tssr80020	transcription start site region 80020	1046 bp downstream