rs45917411 SNP Detail

Summary

• ID
  rs45917411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153472995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTAATT ATTTATTTAT
  TAAAGAGCTG AGCCTGTTGG CACAGGTATA TAAATTCAGG TCCTCAGGAG GTTGAGGAAG
  GAGGATTCTA AATTCAAGGC CAGACTGAGC AAATTATTGA AAATGGGACT CAAACAAGGC
  CAGGCATAAT GAATGGTACA CGCCTAGAAT CCTAGCCTTG GAAGGCAGAG AGGAGGATGG
  Y
  TTTTAGTTCC ATACCAGTCA GGGTTACAAG ACCTTATCTA AAAATAAAAG AGAAAACCAC
  AACAGCAAGC CACCACACAG AACCTAGTGG GGATTAATAG ATATCTCACC ACAGTGTCAC
  ACACCTGGAA TCGCAGCACT TGGGGAAGCT GAGGCAGGGA GAACTTAAAT CTGAAGACAG
  CCAGGGGACA GAGAGACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147999439	ENSMUSSNP725440	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45917411					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153472995 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Cpgi12491	CpG island 12491			1223 bp proximal
Rr567709	regulatory region 567709			619 bp distal
Rr567710	regulatory region 567710			1655 bp proximal
Tssr26915	transcription start site region 26915			1604 bp downstream
Tssr26916	transcription start site region 26916			1700 bp downstream