rs45917585 SNP Detail

Summary

• ID
  rs45917585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117547871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAGGGCCC AAGATAGCAT TATAAGGTAT
  AGGAGTTTGG CCTGGACGCT GCTTTAGGCA GTGTGGACGC AGGTCAAAGA AAAGCATTGA
  TAAGGCCAGA TATAATGGTG TGCGTGTAAT CCCAGGTACA GAGCAACAGC CGTCTGGGTC
  Y
  ACCTTTTAAG GTACATCTAA GAACGGAGGG TGTGTGGCAC CGAGAAGGTC CTGCATTGTT
  CAGTCCTCGG TCCCCAAAGC AAAAGCCCCA GATCTTAAAG GACTTAAaac caggggtggt
  ggcacatttg cacagtcaaa gataatcagg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss52226749	NES15329418	PERLEGEN	MM_PANEL2	f	SNP	C	C		T
ss323498896	CHEV_10_117149022	CHEVERUD	SCREENING_POP	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs45917585					SNP	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52226749	NES15329418	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117547871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2237	CpG island 2237	858 bp distal
Gm56970	predicted gene, 56970	433 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Mdm2	transformed mouse 3T3 cell double minute 2	1208 bp upstream
Rr212986	regulatory region 212986	1930 bp proximal
Rr224309	regulatory region 224309	270 bp distal
Rr385357	regulatory region 385357	within coordinates
Tssr95921	transcription start site region 95921	1881 bp downstream
Tssr95922	transcription start site region 95922	1774 bp downstream
Tssr95923	transcription start site region 95923	1019 bp downstream
Tssr95924	transcription start site region 95924	210 bp downstream
Tssr99461	transcription start site region 99461	1934 bp upstream
Tssr99462	transcription start site region 99462	1879 bp upstream
Tssr99463	transcription start site region 99463	1867 bp upstream
Tssr99464	transcription start site region 99464	1838 bp upstream
Tssr99465	transcription start site region 99465	1761 bp upstream
Tssr99466	transcription start site region 99466	1663 bp upstream
Tssr99467	transcription start site region 99467	1305 bp upstream
Tssr99468	transcription start site region 99468	1230 bp upstream
Tssr99469	transcription start site region 99469	1193 bp upstream