rs45921338 SNP Detail

Summary

• ID
  rs45921338
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162952633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGATGATTT GTTACTGTTC TCTTTTGCAT CCTTTCTCCT
  CCCTTCCCCC CACTTCTGTG TTGTTCCATT TAGAAAGAAA TGTGGCCCCC ATGCTGGACT
  W
  TGTAGTGTCC CGCCCCTGTG TGGCTGGATA GATTGATTAT TCTCCATGCA GCTGTGTATT
  TAGGTTAGCT TGCACTATGC TATGAAGAGC CAATCATGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145951595	ENSMUSSNP2084544	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45921338					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162952633 () rs orientation: forward

Symbol	Name	Function Class
D1Mit314	DNA segment, Chr 1, Massachusetts Institute of Technology 314	857 bp proximal
Rr372359	regulatory region 372359	1751 bp downstream
Rr407202	regulatory region 407202	1732 bp proximal
Rr422057	regulatory region 422057	1167 bp proximal