rs45923852 SNP Detail

Summary

• ID
  rs45923852
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87687795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTT CTGTGTAGGG GGGAAAGTGT
  A
  GAGAAAAAGA AAGGCAGAGA TTAAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132512975	ENSMUSSNP7111270	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323773674	CHEV_11_87610471	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45923852					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87687795 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	797 bp distal
Rr453905	regulatory region 453905	743 bp distal
Tssr3632	transcription start site region 3632	1701 bp downstream
Tssr3633	transcription start site region 3633	630 bp downstream
Tssr103990	transcription start site region 103990	1742 bp downstream
Tssr103991	transcription start site region 103991	1669 bp downstream
Tssr103992	transcription start site region 103992	1651 bp downstream
Tssr103993	transcription start site region 103993	1177 bp downstream
Tssr103994	transcription start site region 103994	1095 bp downstream
Tssr103995	transcription start site region 103995	926 bp downstream
Tssr103996	transcription start site region 103996	876 bp downstream
Tssr103997	transcription start site region 103997	706 bp downstream
Tssr103998	transcription start site region 103998	561 bp downstream
Tssr103999	transcription start site region 103999	347 bp upstream
Tssr104000	transcription start site region 104000	459 bp upstream
Tssr104001	transcription start site region 104001	489 bp upstream
Tssr104002	transcription start site region 104002	515 bp upstream
Tssr104003	transcription start site region 104003	588 bp upstream
Tssr104004	transcription start site region 104004	614 bp upstream
Tssr104005	transcription start site region 104005	638 bp upstream
Tssr109976	transcription start site region 109976	535 bp upstream
Tssr109977	transcription start site region 109977	376 bp downstream
Tssr109978	transcription start site region 109978	404 bp downstream
Tssr109979	transcription start site region 109979	456 bp downstream
Tssr109980	transcription start site region 109980	644 bp downstream