rs45924029 SNP Detail

Summary

• ID
  rs45924029
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23118666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA GAAGTGTCTC GTAGGCGCGG
  M
  GCCCCACTCA GCCCCGGCCC CCCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146216171	ENSMUSSNP5007989	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45924029					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23118666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	within coordinates
Gm56648	predicted gene, 56648	147 bp upstream
Gm59174	predicted gene, 59174	675 bp downstream
Klf9	Kruppel-like transcription factor 9	mRNA-UTR
Rr405898	regulatory region 405898	401 bp downstream
Rr545290	regulatory region 545290	1149 bp distal
Rr545291	regulatory region 545291	199 bp distal
Rr545292	regulatory region 545292	66 bp distal
Tssr155578	transcription start site region 155578	1191 bp downstream
Tssr155579	transcription start site region 155579	461 bp downstream
Tssr155580	transcription start site region 155580	351 bp downstream
Tssr155581	transcription start site region 155581	335 bp downstream
Tssr155582	transcription start site region 155582	298 bp downstream
Tssr155583	transcription start site region 155583	269 bp downstream
Tssr155584	transcription start site region 155584	225 bp downstream
Tssr155585	transcription start site region 155585	165 bp downstream
Tssr155586	transcription start site region 155586	39 bp downstream
Tssr155587	transcription start site region 155587	340 bp upstream
Tssr155588	transcription start site region 155588	374 bp upstream
Tssr158621	transcription start site region 158621	649 bp upstream
Tssr158622	transcription start site region 158622	329 bp upstream
Tssr158623	transcription start site region 158623	754 bp downstream
Tssr158624	transcription start site region 158624	1068 bp downstream