rs45924415 SNP Detail

Summary

• ID
  rs45924415
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24005101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT CACGGGGCGA GCATGCGCAG
  T
  ATGAGGGGGC CCCCATTCCT TTGTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145332668	ENSMUSSNP1635441	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325327336	CHEV_17_23923094	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45924415					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24005101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	within coordinates
Flywch2	FLYWCH family member 2	46 bp upstream
Tssr146663	transcription start site region 146663	44 bp upstream
Tssr146664	transcription start site region 146664	5 bp upstream
Tssr146665	transcription start site region 146665	70 bp downstream