rs45926872 SNP Detail

Summary

• ID
  rs45926872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119157650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTACCGTTG GCTATCCTGG AACTCACTCT GTATGTACAC
  CAGGCTGTCC TGAAAATCAG AGCTCCACTT GCTTCTGCCT CACAGTGCTG GGATCAAAGG
  Y
  GTGTGCTGCC ATTGTTGGCT GCTGGTGTCA TTTTTAAGAA GAGAGAAGGG GCCGGGCGTG
  GTGGCGCACG CCTTTAATCC CAGCACCCGG GAGGCAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132903781	ENSMUSSNP482309	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45926872					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119157650 () rs orientation: forward

Symbol	Name	Function Class
Ccdc40	coiled-coil domain containing 40	1586 bp downstream
Cpgi4265	CpG island 4265	830 bp proximal
Gaa	glucosidase, alpha, acid	1139 bp upstream
Rr232403	regulatory region 232403	650 bp distal
Rr239320	regulatory region 239320	1850 bp distal
Rr239321	regulatory region 239321	1450 bp distal
Rr246278	regulatory region 246278	750 bp proximal
Rr403185	regulatory region 403185	1032 bp upstream
Tssr106170	transcription start site region 106170	1133 bp upstream
Tssr106171	transcription start site region 106171	1180 bp upstream