rs45930433 SNP Detail

Summary

• ID
  rs45930433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138230595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTTTTTTT GTTCTGTTTG TTTTTTTTCT GAGACAGGGT
  TTCTCTGTGT AGCCCTGGCT GTCCTGGAAC TCACTCTGTA GACCAGGCTG GCCTCAAACT
  Y
  AGAAATCCAC CTGCCTCTGC CTCCTGAGTG CTGGGATTAA AGGTGTGTGC CACCACGCCC
  GGCTGGATCC TGAATCTTAA GCAAGCTAGG CAAACATTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135953846	ENSMUSSNP1404534	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45930433					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138230595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13876	CpG island 13876	1370 bp proximal
Eif4e	eukaryotic translation initiation factor 4E	1357 bp upstream
Gm64814	predicted gene, 64814	within coordinates
Mir1956	microRNA 1956	1587 bp upstream
Rr586156	regulatory region 586156	1057 bp proximal
Rr586157	regulatory region 586157	1404 bp proximal
Rr586158	regulatory region 586158	1961 bp proximal
Tssr31989	transcription start site region 31989	1340 bp upstream
Tssr31990	transcription start site region 31990	1584 bp upstream
Tssr31991	transcription start site region 31991	1604 bp upstream
Tssr31992	transcription start site region 31992	1641 bp upstream
Tssr31993	transcription start site region 31993	1689 bp upstream
Tssr31994	transcription start site region 31994	1728 bp upstream
Tssr31995	transcription start site region 31995	1786 bp upstream
Tssr35898	transcription start site region 35898	1393 bp downstream