rs45930757 SNP Detail

Summary

• ID
  rs45930757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58954039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCTGAAG CTTGGGTGGT
  CCAAGCCCCC AAGGTGTATC AGGGCTCAGG GAAGGGGGTG AGGTGACCTG CTGGTTTTTG
  CTCCAGGCCT CGGCCGGCCG GGTGTTTTAA ATGTGTAAGG ATTATATTTC TATCCCTGGT
  GCATGACATC TATGTGAAAA TCTTGCTAGA TTGATTTTAT TTCTTAGTGA TGTTTAAGGC
  Y
  GTGCGAAGAC CCAAACATTT CCCCTGACAT CATCCTTCTC ATTTCTGGCC TTTTGCGGGC
  AGTTGGATGA CTATTCTTAT GTCTTAAATT GGACTCCAGC GCATTGTCTT GTGGTGCGTG
  GAGGACTTCA GAGGCAGGAG ATTGTAGGGA TCTGGTGAGA GGCGCACTGC CTGGGTAGCA
  ATGTGCACAC AGCGCGGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52643921	NES15465391	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45930757					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52643921	NES15465391	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58954039 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5731	CpG island 5731	75 bp proximal
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	344 bp upstream
Rr273002	regulatory region 273002	within coordinates
Rr281494	regulatory region 281494	within coordinates
Tssr120082	transcription start site region 120082	339 bp upstream
Tssr120083	transcription start site region 120083	409 bp upstream
Tssr120084	transcription start site region 120084	1468 bp upstream
Tssr120085	transcription start site region 120085	1594 bp upstream
Tssr120086	transcription start site region 120086	1636 bp upstream
Tssr120087	transcription start site region 120087	1659 bp upstream