rs45931319 SNP Detail

Summary

• ID
  rs45931319
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135765832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACAGGAAC CAAGGTGTTC CCACTTCTTC TCATCTGCCC
  CAGTGATTGT AAGCTTGTGG GAGGGCAGGA GAGAAGCCCT GGGGCAGCCA CACACCTCCC
  M
  CTTCCAGATC GTTCCCCTCA TCCCCATCCC AGGCAATGGT CTCCTCCTCA CAGGTCCTGA
  TAGCTCCCCC TGGGGTCTGG ACAAGGTGAG TCTACACTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145548040	ENSMUSSNP4437833	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45931319					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135765832 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	1671 bp distal
Rr419295	regulatory region 419295	1362 bp distal
Rr419296	regulatory region 419296	509 bp distal
Rr419297	regulatory region 419297	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	1698 bp downstream
Tssr9006	transcription start site region 9006	316 bp upstream
Tssr9007	transcription start site region 9007	813 bp upstream