rs45932475 SNP Detail

Summary

• ID
  rs45932475
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26014604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCAGTCCT AAAACTATTT TTGGTTTGTT TGTTTGTTTG
  TTTTTTCAAG ACAGCGTTTC TCTGTGTAGC CCTGGCTGTC CTGTTTCACT GTGTAGACCA
  G
  ACTGGCCTCG AACTCTCAGA ACTGTGCTTT TCTCTACCTC TTGAGTGCTG GATTAAAGGT
  GTGCGCCACT ACTGCCCAGC AAAAACACTT TTTTAAAAT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146382776	ENSMUSSNP3520866	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs45932475					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26014604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11338	CpG island 11338	1154 bp distal
Gm54107	predicted gene, 54107	1235 bp downstream
Nacc2	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	1781 bp upstream
Rr56450	regulatory region 56450	1003 bp distal
Tssr23074	transcription start site region 23074	1827 bp upstream
Tssr23075	transcription start site region 23075	1754 bp upstream