rs45932636 SNP Detail

Summary

• ID
  rs45932636
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:23347022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACC TGGGGAGAGT TACAGGTTTG
  S
  AGTTGGTAAA TAAGATAAAA ATAAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60709300	NES16359936	PERLEGEN	MM_PANEL2	f	SNP		G	C	G	C	G	G	G	G	G	C
ss148754264	ENSMUSSNP1609812	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45932636					SNP	C	G	C	G	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60709300	NES16359936	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:23347022 () rs orientation: forward

Symbol	Name	Function Class
Gm70599	predicted gene, 70599	1636 bp downstream
Rr15559	regulatory region 15559	1822 bp distal
Rr33139	regulatory region 33139	1422 bp distal
Rr370991	regulatory region 370991	174 bp downstream