rs45933121 SNP Detail

Summary

• ID
  rs45933121
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177810276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGTTGC TGAATTCCCA
  GGTCTACCAT ATTACATGGC ATACACTAGG AACACAAAAT ATATTTGTTG AATGGGTGCG
  CAAACACTGT GTCCTAGGAC TGAGCTAATC TATGAGTTGC TACACTCTTC CAACCAGCGC
  AGGATACTCT CACTAAATGT GAATTCTGTT TTGAGGGTTA ACTGAGACTT TCTTACATCC
  C
  ACTTTTACAA GGGTAACCTT CCTCCATTTA TTGCCTCACT TCTTTATTTT CAAAAATTAA
  AAAAGAAAAA AAGCAGAAGG GCTTTGGAAA ACTTAGTCAT CACTTCTTCA CATTACGTTG
  TATTCACATC TCACGCTACA AACTCCAAAA ACAGCACTGA AAACTAAAAG GCAAATGGAG
  TCTCTGCTAA CCAAGGACTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss146351725	ENSMUSSNP326482	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs45933121					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177810276 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	713 bp upstream
Cpgi1085	CpG island 1085	378 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr25806	regulatory region 25806	1019 bp distal
Rr29061	regulatory region 29061	124 bp proximal
Rr396636	regulatory region 396636	334 bp upstream
Tssr10371	transcription start site region 10371	717 bp upstream
Tssr10372	transcription start site region 10372	756 bp upstream