rs45933406 SNP Detail

Summary

• ID
  rs45933406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22712365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGTTGG CAAAAGACGT
  AATGGCCGGC TCTCTGCCTA GTTTACATGC TGAAGGGAAA GCCGTGAGCG AGCACTGTGC
  ATGTGCTACG TGCTGATTGT GAGATGCTCA TTATGGGATG CCCGAGTGGA TCAAGAAGTC
  CCTGCACATA AACCCAGTGC ATCTACCCAT GGTAGTTCTG AGGTCTCCGG AGAGTGAAAA
  Y
  GCCCAGTGAA CTAAATTGGG TTGAGAGTTT TCAAACTTTG GGGCATTTCA AGGTGTGAAC
  GGGGAATACA TAGACAGGTG AAACACTGAA CTCCTCACAG GGTCCTGCAA GCTTCCCAAA
  ATGCTTCCAT CCTAGTGGTG ACAGTTTCCC AGCCTCAGAA TAGAAAGGCG GCAAACAGGA
  GATAGGACTC TCTGTGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63681328	NES17064327	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45933406					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681328	NES17064327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22712365 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	within coordinates
Tssr4818	transcription start site region 4818	791 bp downstream
Tssr4819	transcription start site region 4819	1716 bp upstream
Tssr137557	transcription start site region 137557	1564 bp downstream
Tssr137558	transcription start site region 137558	1034 bp downstream
Tssr137559	transcription start site region 137559	838 bp downstream
Tssr137560	transcription start site region 137560	795 bp downstream
Tssr137561	transcription start site region 137561	770 bp downstream
Tssr137562	transcription start site region 137562	444 bp downstream
Tssr137563	transcription start site region 137563	614 bp upstream
Tssr137564	transcription start site region 137564	633 bp upstream
Tssr137565	transcription start site region 137565	698 bp upstream
Tssr137566	transcription start site region 137566	797 bp upstream
Tssr137567	transcription start site region 137567	1162 bp upstream
Tssr137568	transcription start site region 137568	1181 bp upstream
Tssr137569	transcription start site region 137569	1212 bp upstream
Tssr137570	transcription start site region 137570	1227 bp upstream
Tssr137571	transcription start site region 137571	1561 bp upstream
Tssr137572	transcription start site region 137572	1584 bp upstream
Tssr137573	transcription start site region 137573	1678 bp upstream
Tssr137574	transcription start site region 137574	1699 bp upstream
Tssr137575	transcription start site region 137575	1705 bp upstream
Tssr140501	transcription start site region 140501	1466 bp upstream
Tssr140502	transcription start site region 140502	1320 bp upstream
Tssr140503	transcription start site region 140503	1282 bp upstream
Tssr140504	transcription start site region 140504	735 bp downstream
Tssr140505	transcription start site region 140505	808 bp downstream
Tssr140506	transcription start site region 140506	1215 bp downstream
Tssr140507	transcription start site region 140507	1598 bp downstream
Tssr140508	transcription start site region 140508	1642 bp downstream
Tssr140509	transcription start site region 140509	1661 bp downstream
Tssr140510	transcription start site region 140510	1676 bp downstream
Tssr140511	transcription start site region 140511	1719 bp downstream