rs45934978 SNP Detail

Summary

• ID
  rs45934978
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102283545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATGTGT GTGTGTGTGT
  GTGTGTGTTT CCTTTCCCTA TATTCCTCTC CTGGGAACAC ATGCGAGGTT TCAGCTGGGC
  TACATCTGCC TGTGCTGTGT ATATTTATTC TGGAGTTATA GGGTAGACAA TGTAAAATGT
  TTGTGACAGA GTAGATACAT TAACCTTCCA AAACATGGCT GACCCAAGGC ATACACCTTC
  S
  TGGGTTTCTT TCCCACTGGT ACCTTGTGTG CCACCTGAAA GTGTGGGGTC TTTCTTAAAT
  GTGTTCCCAA CCACGGGGCT TCTTGTAGTG CTTATCTGAT AAAAGGATTA CAGTGCCTTC
  CATATGGATC CAGTACAATA TATTAATTCA TTAAAAAGTT TTTTTTTCTT GCCTCATGCA
  AGCTTCCCCC TGTCTTTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147112333	ENSMUSSNP6991340	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320437754	CHEV_2_102293357	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45934978					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102283545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	920 bp distal
Fjx1	four jointed box 1	1408 bp upstream
Rr561695	regulatory region 561695	1856 bp distal
Rr561696	regulatory region 561696	611 bp distal
Rr561697	regulatory region 561697	243 bp proximal
Rr561698	regulatory region 561698	370 bp proximal
Tssr25397	transcription start site region 25397	1426 bp upstream
Tssr25398	transcription start site region 25398	1385 bp upstream
Tssr25399	transcription start site region 25399	1357 bp upstream