rs45935991 SNP Detail

Summary

• ID
  rs45935991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30064653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCTTGC ACACATGCAC
  ACCCACACAA GAGAAATGAG CAGAAAACGA ACTGCAGAGT GAATGGAGAA AATAAATGCT
  CGCAATAATG CATAGTGAAC ACTCAACATC CTATTATCAG CTCATTGTAT TATTATAATA
  ATTATTATCA GAATAAAGAC TTGAATCTTC ACCATGGCCT GTCATAGGAT GCGTTCTGTC
  Y
  TCTCTGAATC CATATGTTGG CATCCTAATG CCATTGTCTG AAAAATGGCC ATATTGGAGA
  AAGGCCTTTG AAGGCTGAAG TCAATGGGAC CTCCCCTGAT CCCATCTAGG ACACAGACAA
  GACACTGGGA GAAGAGGCAG CCAGCCAGGG AGCCCAACCC TGCTGGCACC CTGACCTCAG
  ACCTTCAGGC TCCATGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60556133	NES16574300	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45935991					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60556133	NES16574300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30064653 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	864 bp upstream
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	748 bp proximal
Rr341132	regulatory region 341132	348 bp proximal
Rr392501	regulatory region 392501	1129 bp upstream
Tssr143596	transcription start site region 143596	851 bp upstream
Tssr143597	transcription start site region 143597	868 bp upstream