rs45936413 SNP Detail

Summary

• ID
  rs45936413
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129914097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGAGG CAGGCGGATT
  TCTGAGTCAA GGCCAGCCTG GTCTACAGAG TGAGTTCCAG GACAGCCAGG GCTACACAGA
  GAAACCCTGT TTCAAAAAAA AAAAACAAAA ACAGAATGAG CAAACAGCTT TCCTTTTATT
  GGTCTATCAG TTTCAGAAAT ATCAGACAGG TGTTGCCATG TAAAAAAAAA TTGAGGACAG
  W
  CAAGGACTAA CCTAGTGAAC ATCTGAATTA AGATTTAGAG CTGGAAGGAG GACAGGCGGC
  TGGTCAAAGA CTCACTGGAG AAGGATGCTT GACACCTTGA GGTTGGTTGA CTCCTGGAAC
  CCAGAAGGTG GAAAGAAACA ACCAACCCCA ATAAGGTGCC CTTGGACCTT CACACAGGTA
  CCGAGGTTCT CCAGCACACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60840628	NES16012848	PERLEGEN	MM_PANEL2	f	SNP		A	T	A	T	T	T	T	T		A	T	T	A		T
ss144477269	ENSMUSSNP4365091	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A						T
ss321692392	CHEV_5_130361127	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45936413					SNP	T	A	T	A	T	T	T	T	T	A	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60840628	NES16012848	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129914097 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	1711 bp proximal
Rr399383	regulatory region 399383	1952 bp upstream
Tssr53498	transcription start site region 53498	1883 bp downstream