rs45936692 SNP Detail

Summary

• ID
  rs45936692
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24790583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTAACAT GCATTAATTT TTAAAACAAT AAAAATCCCT
  TTGTGGAGCC AATTTACATT CCCGAGTTCC CTGCCTTTGC TGGAAAGTTC AGGTGAGGGC
  R
  AGCACACATA ACTGCATGTG TTCTGATAAT TACAATTCAT CCGAATTTGT AGTTCCCATT
  TTGCTTGTCT CATTACAGAG CCAAGGTGAC TTTTAGGATG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss61262561	NES16880295	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs45936692					SNP	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262561	NES16880295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24790583 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	522 bp downstream
Med23	mediator complex subunit 23	1225 bp downstream
Tssr92746	transcription start site region 92746	935 bp upstream
Tssr92747	transcription start site region 92747	1008 bp upstream
Tssr97085	transcription start site region 97085	807 bp downstream
Tssr97086	transcription start site region 97086	853 bp downstream
Tssr97087	transcription start site region 97087	887 bp downstream
Tssr97088	transcription start site region 97088	945 bp downstream
Tssr97089	transcription start site region 97089	964 bp downstream
Tssr97090	transcription start site region 97090	995 bp downstream
Tssr97091	transcription start site region 97091	1386 bp downstream
Tssr97092	transcription start site region 97092	1406 bp downstream
Tssr97093	transcription start site region 97093	1430 bp downstream
Tssr97094	transcription start site region 97094	1446 bp downstream
Tssr97095	transcription start site region 97095	1460 bp downstream
Tssr97096	transcription start site region 97096	1725 bp downstream
Tssr97097	transcription start site region 97097	1999 bp downstream