rs45937099 SNP Detail

Summary

• ID
  rs45937099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5642416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCCCATT TCTTTGGAAC
  AATACTCTAA GCACAGGAAA ATTCTAATTA AAAAAAAAAA AACTAAAACA AAAACCAAAA
  AACATTAGTG TGGTGAATTT CCAGAAGACT ACGGTAGCCC TTCAGATTTT GTCTTGAAAA
  GACTGATCCT AGATTAGCAG ACAATGGGGA GTTGTAAAAG TACACTTATT GTACTAACAG
  Y
  TAAGACAGAA AATGTACTAG GAGATTCTGG TTTAGACACT ATTGTTTTAC TCTTGTTCTG
  TGAACACATC TCTTATTGGG TTTGGAGTAT AATATGATTT TATATTGAAA AGTAACACCC
  TCAATGAGAT CCTTTAATAC CATTAAAACC CAGGGTTTTG TTGTTGTTGT TTTGTTTTGT
  TTTGAGACAG GGTTTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145954960	ENSMUSSNP4263576	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45937099					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5642416 () rs orientation: forward

Symbol	Name	Function Class
4930423M02Rik	RIKEN cDNA 4930423M02 gene	132 bp downstream
Cpgi13998	CpG island 13998	1409 bp proximal
Fam110b	family with sequence similarity 110, member B	1593 bp upstream
Rr588322	regulatory region 588322	1215 bp proximal
Rr588323	regulatory region 588323	1716 bp proximal
Rr588324	regulatory region 588324	1922 bp proximal
Tssr36378	transcription start site region 36378	1668 bp upstream
Tssr36379	transcription start site region 36379	1717 bp upstream
Tssr36380	transcription start site region 36380	1800 bp upstream
Tssr36381	transcription start site region 36381	1852 bp upstream