rs45937576 SNP Detail

Summary

• ID
  rs45937576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171018515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCAGTCCT GGGGATCACA CGAAGAGTTT TGCCTGAGCT
  TAGACTTCGC TTGCTTTCGC TTATTCGTTC ATTTTTTGGC GCAGGGTCTC CCTTTGTACC
  Y
  GAGACTGGTC TTGAACTGGC TACATAGCTG AGGGGCCTCA AACTCATCCT CCTGATTCCA
  CCTCCTAGAC CACAGATGTG CGCGCACATC ACAAAGGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss119995967	PARCsnp_1.12061	PARC_SEQ	INBRED	f	SNP			C	T
ss119997562	PARCsnp_1.01050	PARC_SEQ	INBRED	f	SNP			C	T
ss146156090	ENSMUSSNP523812	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs45937576					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171018515 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	59 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423236	regulatory region 423236	1275 bp distal
Rr423237	regulatory region 423237	861 bp distal
Rr423238	regulatory region 423238	600 bp distal