rs45941004 SNP Detail

Summary

• ID
  rs45941004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61862038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGCACC TGGCCTTTTG
  CTTTTAGGCC TATGCTAAGG CAGCATACCA TGGAAGGAAC ATCTGGCAGA ACAAAACCAC
  TCATCCCATG GTGGGAAAGA GGTAGTCCAG GCTAGCTCAT TTGAACCCAG GAGAGGGTCC
  ACATCTGGGC TAAACAACCC ATCAGCTAAG AGCCCTGCCT TGATGGCTTT AGATAGGCTG
  Y
  ACTTCTCCAT GCTGTGGGAG GACCCTACAA CCTAGTGTAT CCAGACAGCA GGGCATCAAG
  CGTACAACAC ACAGCAAATG TCAGATGTCG GTGCAAGCAC AAATGACAGA GAATGTTCAG
  CATCCACAGG GTACAGGGAC TCAGCTGAGG ATCTGGCTCT AGGCAGGCTT CCATCTTCGC
  TTTAACTCTG ACCCTGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61280188	NES16887382	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45941004					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280188	NES16887382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61862038 () rs orientation: forward

Symbol	Name	Function Class
Gm47919	predicted gene, 47919	644 bp downstream
Gm66887	predicted gene, 66887	695 bp downstream
Rr432503	regulatory region 432503	1587 bp distal