rs45941534 SNP Detail

Summary

• ID
  rs45941534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72951528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATGAATG AAACTGCATG
  GACAGAACTT AGCCCAGTCT TCCTTCTCAG CATTTTGCTT GTCTTGGAAG TGGAATTCTG
  AAAGCAACAG GGCAGGCCCA AAGGCCAGTG TGAAGCGCAG AACCACCTTT GGACGGATTT
  GGCTAATGTC CTCCATCCCC AGGTTGAGAC CCAGACTGCT CACAGAAAAC CCTAGGCATC
  R
  GTAGAAGGCC ACTAGGAGGC AGCAGAGGGT CATAGGCTGC TCCGGACCCT GCCGGGTCTT
  AGCATGTTAT GCCACCCCAT AATTTCCCTC TTACTGTGCA GTAACTGCCT GCCCTAACAG
  TGTTTTAGGA CTTCAGGGTG AGTGTAATCC GAGTTAGACT GTGTGCATGT AGACTCCGCT
  GGCCATTGCC TTCCAGAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61420625	NES16804505	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs45941534					SNP	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420625	NES16804505	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72951528 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22026	CpG island 22026	410 bp proximal
Pigbos1	Pigb opposite strand 1	1467 bp downstream
Rab27a	RAB27A, member RAS oncogene family	608 bp upstream
Rr197292	regulatory region 197292	1128 bp distal
Rr197293	regulatory region 197293	128 bp distal
Rr206716	regulatory region 206716	within coordinates
Tssr86076	transcription start site region 86076	556 bp upstream
Tssr86077	transcription start site region 86077	587 bp upstream
Tssr86078	transcription start site region 86078	621 bp upstream
Tssr86079	transcription start site region 86079	640 bp upstream