rs45943551 SNP Detail

Summary

• ID
  rs45943551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165664549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT AAGGGGACAG CCACCTGAGG
  Y
  GGGCTGTCGT GGTGAGGCAC GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146008305	ENSMUSSNP2213095	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320087249	CHEV_1_167767111	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45943551					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165664549 () rs orientation: forward

Symbol	Name	Function Class
Cd247	CD247 antigen	within coordinates
Gm71096	predicted gene, 71096	within coordinates
Rr422479	regulatory region 422479	1916 bp distal
Rr422480	regulatory region 422480	within coordinates
Rr422481	regulatory region 422481	488 bp proximal
Tssr268	transcription start site region 268	1943 bp upstream
Tssr9850	transcription start site region 9850	1692 bp upstream
Tssr14797	transcription start site region 14797	475 bp upstream