rs45943718 SNP Detail

Summary

• ID
  rs45943718
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29733717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC AGAAAAATAA AAACTCTCAA
  G
  TTCTACAAGG ATACCACCAC TTGAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133092104	ENSMUSSNP5919442	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321775192	CHEV_6_29683718	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45943718					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29733717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17242	CpG island 17242	1621 bp proximal
Rr627623	regulatory region 627623	1486 bp proximal
Smo	smoothened, frizzled class receptor	1785 bp upstream
Tssr55287	transcription start site region 55287	1753 bp upstream
Tssr55288	transcription start site region 55288	1893 bp upstream
Tssr55289	transcription start site region 55289	1913 bp upstream
Tssr55290	transcription start site region 55290	1949 bp upstream